Code Ocean
Code Ocean is a cloud-based platform that offers computational science solutions for bioinformatics and computational biology, ensuring reproducibility, traceability, and HIPAA compliance.
Overview of Code Ocean
Code Ocean is a cloud-based computational science platform designed for collaborative research in bioinformatics and computational biology. It provides a comprehensive suite of tools and features aimed at helping computational scientists efficiently provision, automate, and scale workflows. The platform ensures that workflows are reproducible and traceable, adhering to rigorous scientific standards. Code Ocean operates from its headquarters in midtown Manhattan, NY, with an additional office in Tel Aviv and remote staff across the US and Canada.
Code Ocean Services
Code Ocean offers a range of services tailored to the needs of computational scientists. Key features include Compute Capsules, which encapsulate the workflow environments; Pipelines for streamlined task automation; and advanced Data Management systems that comply with FAIR principles. The platform also supports integration with MLFlow for AI and machine learning model development. Additionally, AWS Batch is utilized for scalable bioinformatics pipelines, facilitating automated processes without the need for setup. The platform boasts compliance with HIPAA standards, ensuring the security and privacy of health-related data.
Products of Code Ocean
Code Ocean's product offerings are designed to enhance computational research. Their platform includes Compute Capsules for environment management, Pipelines for workflow automation, and a sophisticated Data Management system guided by FAIR principles. The Lineage Graphs feature allows tracking of data lineage, while Collections and Apps cater specifically to bioinformatics workflows. The Open Science Library (OSL) serves as an industry standard for ensuring computational research integrity. These products collectively contribute to ensuring reproducibility, traceability, and transparency in scientific research.
Code Ocean’s Integration Capabilities
Code Ocean supports seamless integration with MLFlow, enabling the development, tracking, and management of AI and machine learning models. This integration allows computational scientists to enhance their workflow capabilities with advanced machine learning techniques. Additionally, the utilization of AWS Batch simplifies the scaling and automation of bioinformatics pipelines, offering a robust, setup-free solution for managing large-scale computational tasks. These integrations are designed to optimize the efficiency and precision of computational research activities.
Code Ocean Locations
Code Ocean operates from its main headquarters in midtown Manhattan, NY. The company also maintains an office in Tel Aviv, Israel, and has a team of remote employees spread across the United States and Canada. This geographic diversity enables Code Ocean to tap into a broad talent pool, ensuring it has the expertise required to support its sophisticated computational science platform. The varied locations also facilitate broader collaboration and service offerings across different regions.